Cual es el programa más viejo que todavía se usa?
La idea es recapitular cuales programas para reconstrucción filogenética (selección de arboles óptimos) usamos y entre éstos ordenarlos temporalmente. Cual creen que sea? El uso incluye no solo los propósitos de investigación, sino también en la enseñanza.
Mi apuesta es PAUP. En algunos grupos de investigación todavía se usa para la selección de arboles bajo parsimonia y/o verosimilitud!
Este es su espacio para difundir información sobre actividades, cursos, investigación, congresos, etc y promover el contacto entre nuestra comunidad filogenética. Todos pueden publicar. Bienvenidos!
Contenido más reciente ...
12 de agosto de 2014
1 de julio de 2014
Modern Phylogenetic comparative methods. Conferencia Sevilla 2014.
Phylogenetic comparative methods are now widely used in very diverse
fields of evolutionary biology to make robust inferences
from interspecific data and phylogenies. Currently, we witness a rapid
flourishing of the phylogenetic toolbox allowing researchers to tackle
diverse questions concerning the evolution of species and their traits.
The conference aims at providing a bouquet of overviews on the most
recent developments by the most prominent experts of the comparative
methodology, and also at attracting a wide range of contributions
from different fields of evolutionary biology to demonstrate how the
phylogenetic comparative approach can be used to address an ample array
of biological questions in different taxa.
Joe Felsenstein
University of Washington, USA
Robert P. Freckleton
University of Sheffield, UK
Thomas F. Hansen
University of Oslo, Norway
Indiana University, USA
Charles L. Nunn
Duke University, USA
Emmanuel Paradis
Institut de Recherche pour le Développement, France
Más información en el sitio Web:
http://www.mpcm-evolution.org/conference/
Joe Felsenstein
University of Washington, USA
Robert P. Freckleton
University of Sheffield, UK
Thomas F. Hansen
University of Oslo, Norway
Anthony R. Ives
University of Wisconsin-Madison, USA
Emília MartinsIndiana University, USA
Charles L. Nunn
Duke University, USA
Emmanuel Paradis
Institut de Recherche pour le Développement, France
Más información en el sitio Web:
http://www.mpcm-evolution.org/conference/
16 de junio de 2014
POY version 5: phylogenetic analysis using dynamic homologies under multiple optimality criteria
POY version 5: phylogenetic analysis using dynamic homologies under multiple optimality criteria
We present POY version 5, an open source program for the phylogenetic analysis of diverse data types including qualitative, aligned sequences, unaligned sequences, genomic data, and user-defined sequences. In addition to the maximum-parsimony optimality criterion supported by POY4, POY5 supports several types of maximum likelihood as well as posterior probability. To make these analyses feasible, new heuristic search algorithms and parallelization options have been implemented for all criteria.
CLADISTICS
© The Willi Hennig Society 2014.
- Ward C. Wheeler*,
- Nicholas Lucaroni,
- Lin Hong,
- Louise M. Crowley and
- Andrés Varón
We present POY version 5, an open source program for the phylogenetic analysis of diverse data types including qualitative, aligned sequences, unaligned sequences, genomic data, and user-defined sequences. In addition to the maximum-parsimony optimality criterion supported by POY4, POY5 supports several types of maximum likelihood as well as posterior probability. To make these analyses feasible, new heuristic search algorithms and parallelization options have been implemented for all criteria.
CLADISTICS
© The Willi Hennig Society 2014.
Article first published online: 13 JUN 2014
DOI: 10.1111/cla.12083
Suscribirse a:
Entradas (Atom)